Evaluation of whole genome sequencing for routine subtyping of Salmonella Typhimurium for surveillance and outbreak investigation
Wuyts, V. Bertrand, Sophie Marchal, K.
Wuyts, V.
Bertrand, Sophie
Marchal, K.
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Abstract
Characterisation of bacterial isolates beyond the species and subspecies level, i.e. subtyping, is necessary for surveillance of infectious diseases and is crucial to identify a link between the origin of an infection and the human isolate in case of outbreak situations.At the Belgian National Reference Centre (NRC) for
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Date
2015-01-15
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Scientific poster, presentation or proceeding
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Keywords
a, additional, an, analysi, analysis, Antibiotic, Antibiotic resistance, AS, aspects, at, Belgian, Case, data, Diagnosis, disease, Diseases, Electrophoresis, epidemiology, Evaluating, EVALUATION, Genome, Genotype, Human, identify, INFECTION, Infectious, Infectious diseases, investigation, IS, LEVEL, method, national, Next-generation sequencing, NGS, ORIGIN, outbreak, Phenotype, resistance, routine, S, Salmonella, Salmonella enterica, Salmonella typhimurium, Shigella, situation, Species, study, Subtyping, Surveillance, Technique, technology, whole genome, whole genome sequencing